Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
TGCT rs61168067 chr7:127785074 C/A 1.78E-9 134 42.27 37.53 12.55 KM Plot
TGCT rs61238373 chr2:29494619 A/G 0 134 42.27 25.02 0.57 KM Plot
TGCT rs61314551 chr2:74109549 A/G 2.7E-7 129 40.57 95.37 22.83 KM Plot
TGCT rs61392587 chr2:3944805 CTT/C 4.58E-11 131 46.07 40.57 13.43 KM Plot
TGCT rs61525327 chr5:1799743 A/C 1.89E-5 132 42.27 43.9 20.6 KM Plot
TGCT rs61708580 chr5:1827035 CCCAGTCCCTGTGGAAGTGA/C 7.9E-6 131 42.1 48.4 24.73 KM Plot
TGCT rs61772810 chr1:49038890 G/A 1.49E-6 128 37.2 111.63 0.57 KM Plot
TGCT rs61946168 chr12:129264272 A/G 1.89E-5 133 42.03 66.9 21.75 KM Plot
TGCT rs62063760 chr17:77041619 G/A 7.31E-5 129 46.77 36.63 18.07 KM Plot
TGCT rs62063762 chr17:77042146 C/T 7.31E-5 129 46.77 36.63 18.07 KM Plot
TGCT rs62104504 chr19:30341864 G/A 2.74E-6 131 37.3 51.67 20.6 KM Plot
TGCT rs62104507 chr19:30348996 C/T 6.65E-5 131 37.53 48.87 29.4 KM Plot
TGCT rs62153764 chr2:99818612 T/G 2.95E-5 131 42.1 66.9 26.4 KM Plot
TGCT rs62281198 chr3:172433685 T/C 8.19E-5 134 25.33 37.42 45.1 KM Plot
TGCT rs62325142 chr4:154717790 A/G 8.89E-5 134 40.57 49.93 50.9 KM Plot